PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_57676g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 327aa    MW: 35329 Da    PI: 6.2629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_57676g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13153195754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++++Lr+++Pk       K + a+iL  AveY+k+L
  MA_57676g0010 153 MAERRRRKKLNDRLFTLRSVVPKV-----SKTDRASILGDAVEYLKEL 195
                    79*********************6.....4****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-15144207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.586146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-11152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-14152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14153205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-12153199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEMAWAGLLD ESFSSFRAIV DERGEYDFYP IMDPNGGTLE TLLDSSLMCS DGSVLSTVGG  60
SISTFHDLGC SITTTADTLE ALKGSDELGL LQRRAGIESG FHKNGGNEKP NGVVGERVAD  120
APHAANNNNN NGCANVASVG RGRKNGLPAK NLMAERRRRK KLNDRLFTLR SVVPKVSKTD  180
RASILGDAVE YLKELLQRIN GLHTEFMSGS SNSKPLAPTL LDFPRIMNQE YQASSLNPEV  240
ESARVEVNTR EGKALSIQMF SSKKPGLLLS TIRALDGLGL DVKQAVISCL NGFALDVFQA  300
EQHMARDVTA EEIKALLLHT AGYQAGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154161ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1226871e-180BT122687.1 Picea sitchensis clone WS0454_C09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583788.12e-72PREDICTED: transcription factor SCREAM2
SwissprotQ9LPW36e-70SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLD5A9343e-96D5A934_PICSI; Putative uncharacterized protein
STRINGBra016749.1-P8e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.14e-71bHLH family protein